View snp file

Allow the identification ...File Name:CNViewer Author:dna.leeds.ac.ukLicense:Freeware (Free)File Size:Runs on:WindowsEasy Homozygosity Profiling of Affymetrix SNP Easy Homozygosity Profiling of Affymetrix SNP Arrays.File Name:CMT_R.zip Author:ehopasaLicense:Freeware (Free)File Size:4 KbRuns on:Windows; LinuxReader is the ultimate Reader tool that . Reader is the ultimate Reader tool that brings the Safari 5 Reader features to Firefox and helps you read more of the web by transforming text on any website using fonts, colors, and layouts of your choosing..File Name:reader-0.4-fx.xpi Author:Baris DerinLicense:Freeware (Free)File Size:92 KbRuns on:LinuxAssist you to read PDF freely and digitally sign and print all PDF files. Tipard Free PDF Reader is your best assistant to read PDF file. With this PDF Reader, you can open, view, zoom and print all PDF documents freely.File Name:Tipard Free PDF Reader Author:Tipard StudioLicense:Shareware ($)File Size:8.19 MbRuns on:WinXP, WinNT 4.x, Win2003, Win2000, Win Vista, Windows 7, Windows 7 x64This is a Perl module for doing snp analysis based on shotgun sequencing reads and a reference genome sequence. Its primary input is the cigar alignment format outputted from ssaha2..File Name:SNP/Indel Analysis Author:Jacqui, ThomasLicense:Freeware (Free)File Size:Runs on:WindowsCurrently GEDI-ADMX handles genotype data from unrelated individuals.Local ancestry inference uses a factorial HMMs trained on ancestralhaplotypes to impute genotypes at all typed SNP loci (temporarily markingeach SNP genotype as missing) under each possible local ancestry.GEDI-ADMX assigns to each locus the local ancestry that yields the highestimputation accuracy, as assessed using a weighted-voting scheme based onmultiple SNP windows .File Name:GEDI-ADMXViewer-1.0.3.zip Author:Bioinformatics LabLicense:Freeware (Free)File Size:7.34 MbRuns on:Win All

SNP Analyser was developed as an easy-to-use and useful utility for the efficient analysis and management of Affymetrix SNP DMET Data analysis. SNP Analyser is a software that was designed with the help of the Java programming language.File Name:SNP_Analyser1.1.4.jar Author:Peppe, Pietro Hiram GuzziLicense:Freeware (Free)File Size:Runs on:Windows All Advertisement Advertisement GSA-SNP is a gene set analysis software that can process SNP data as well as gene and haplotype GSA-SNP is a gene set analysis software that can process SNP data as well as gene and haplotype data..File Name:GSA-SNP.jar Author:gsa-snpLicense:Freeware (Free)File Size:247 KbRuns on:Windows; LinuxReports the difference between different SNP values in terms of Transcription Binding Reports the difference between different SNP values in terms of Transcription Binding efficiencies..File Name:Get_SNP_Info.jar Author:snpscoreLicense:Freeware (Free)File Size:5 KbRuns on:N/ASNPTools is a suite of tools that enables integrative SNP analysis in next generation sequencing data with large cohorts. It not only calls SNP in a population with high sensitivity and accuracy, but also employs a novel imputation engine to achieve ...File Name:snptools-1.0.tar.gz Author:Danny Challis, Fuli Yu, JinYu, Yi Wang, Zhuoyi HuangLicense:Freeware (Free)File Size:508 KbRuns on:BSD; LinuxThe annotation files for Illumina SNP genotyping platforms generated for performing Homozygosity Haplotype The annotation files for Illumina SNP genotyping platforms generated for performing Homozygosity Haplotype analysis.File Name:HH annotations for IlluminaSNP chip Author:hhannotLicense:Freeware (Free)File Size:26.21 MbRuns on:Windows; Mac; LinuxThis software detects homologous horizontal gene transfer (HGT) from SNP data. Based on SNP alleles calls and locations, it breaks the genomes into locally colinear blocks, and looks for cases where SNPs do not agree with the vertical pattern of ...File Name:HGT_paper_data.zip Author:Shea GardnerLicense:Freeware (Free)File Size:888.52 MbRuns on:BSD; LinuxCNViewer is designed to allow the visual comparison of copy number (CN state) and loss of heterozygosity (LOH) data from Affymetrix SNP 6.0 microarrays between affected and unaffected members of a pedigree. The program aims to

IPOLiS mobile app lets you to view the live video and control pan/tilt/zoom functions, search & playback anywhere with your smartphone if you use Samsung Techwin's security system. iPOLiS mobile is a free application designed specifically for Samsung Techwin's security network product. ◎ iPOLiS mobile Help Supported models will be updated continuously. ◎ This application is optimized for Android OS 4.x◎ Recommended Smartphone - Samsung Galaxy S3 (Android v4.3)- Samsung Galaxy S4 (Android v4.4.2)- Samsung Galaxy S5 (Android v4.4.2)- Samsung Galaxy Note (Android v4.0.4)- Samsung Galaxy Note 10.1 (Android v4.1.2)◎ Current compatible with such models as : >> N/W Camera - SNB-5000, SND-5080/F, SNV-5080, SNV-5010, SNO-5080R, SNV-5080R (v2.10 or Higher) - SNB-7000, SND-7080/F, SNV-7080, SNO-7080R, SNV-7080R (v1.20 or Higher) - SNB-1001, SND-1080, SND-1011, SNV-1080, SNO-1080R, SNV-1080R (v1.00 or Higher) - SNB-3002, SND-3082/F, SNV-3082 (v1.00 or Higher) - SNB-5001, SND-5061, SND-5011, SND-5010 (v1.00 or Higher) - SNB-7001, SND-7061, SND-7011 (v1.00 or Higher) - SNB-7002, SND-7082/F, SNV-7082 (v1.00 or Higher) - SNZ-5200 (v1.05 or Higher) - SNV-3120 (v1.24 or higher) - SNP-3120, SNP-3120V, SNP-3120VH (v1.27 or Higher) - SNP-5200, SNP-5200H (v2.00 or Higher) - SNP-3371, SNP-3371H, SNP-3371TH (v1.01 or Higher) - SNP-3302, SNP-3302H (v1.01 or Higher) - SNP-6200, SNP-6200H (v1.00 or Higher)>> Encoder - SPE-100, SPE-400, SPE-1600R, SPE-101 v1.04 or higher>> DVR - SRD-1670/1650/1630/1610(D/DC), SRD-870/850/830(D/DC), SRD-470(D) (v1.08 or higher) - SRD-1652D/852D,1650DU (v1.08 or higher) - SRD-1671/1651/871/851/471 (v1.08 or higher) * Live Only - SRD-440 (v1.05 or higher) - SRD-442 (v1.01 or higher) - SRD-1640/840 (v1.02 or higher) - SRD-1641/841 (v1.00 or higher) - SDE-5001/5002/4001/4004(V) (v1.02 or higher) - SDE-3001/3003 (v1.06 or higher) - SDE-4001/4002/5001/5002 (v1.00 or higher)>> NVR - SRN-470D, SRN-1670D, SRN-1671 (v1.05 or higher)* S/W NVR - NET-i ware (v1.39 or higher)◎ Recommended profile information for optimal live video monitoring - If using MJPEG : 320x240, 5fps, Normal(10) - If using H.264 : 320x240, 10fps, Normal(10) * Videos of more than 1.3M pixels are not supported. ◎ Features - View live streaming video with PTZ control - Supported format : H.264/MJPEG - Video Image Flip/Mirror, Video Image Capture - Calendar Search/Playback/Bookmark functions (DVRs, NVRs should be upgraded to new firmware.) - Provide the profile selection(N/W), show the profile status - Password function for security - Register up to 32 number of cameras - Digital Zoom - Show the status of a network as a color - Quick & easy access at mobile environment & Wi-Fi networks. - Compatible with "Dynamic domain naming service"(DDNS) - Multi-Language ◎ The entire items are not supported in every device. Some items are not supported in certain devices.◎ User of previous version software (v1.0) needs to register added devices to the newly installed software again.◎ This application uses FFmpeg under LGPL v2.1 ◎ The device can

• Multi-Streaming This network camera can display videos in different resolutions and qualities simultaneously using different CODECs.  However, MPEG-4 video can not be played on a web page. Use CMS software if you want to play the video on a web page. Page 10: Recomended Sd/Sdhc Memory Item Name Quantity Description Model Name User Manual, Installer S/W CD, CMS S/W DVD Quick Guide SNP-5200/SNP-5200H Used to test the camera BNC cable connection to a portable display device If installing it indoors or in a Installation base ceiling housing... Page 11 Appearance Item Name Quantity Description Model Name Used for attaching the Hexagon screw installation base to the camera Used for fixing the installation SNP-5200H L Wrench base after attaching it to the camera Installation base Bracket for mounting outdoors English _11... Page 12: At A Glance (Snp-5200) AT A GLANCE (SNP-5200) Appearance Item Description Unlock button Used if installing the camera in the installation base. Dome Cover Dome cover for the lens and unit protection. Main unit Protect the internal PTZ mechanism from the direct sunlight. Page 13 Bottom View of Installation Inner View of Installation Base Base 1 2 3 4 5 6 7 8 1 2 3 4 5 6 7 8 9 Protocol OFF OFF OFF OFF Pelco-D OFF OFF OFF Pelco-P OFF OFF OFF OFF Panasonic OFF OFF Vicon... Page 14 overview Item Description Audio Output Port Used to connect the audio output cable. Alarm I/O Port Used to connect the alarm I/O cable. Power Port Used to connect the power. Video Out Port Analog video output port. (for installation) 14_ overview... Page 15: At A Glance (Snp-5200H) AT A GLANCE (SNP-5200H) Appearance Item Description Protects the internal PTZ mechanism from the direct sunlight, rain or Main unit external impact. Dome Cover Dome cover for the lens and unit protection. Cable hook that is designed for preventing an accidental fall of the dome Safety cable hook camera. Page 16 overview Bottom View of Installation Inner View of Installation Base Base Item Description Communications Set the transfer rate and protocols. Setup Switch ID Setup Switch Specify the camera ID. Communications Used for RS-485 communications. and AUX Ports Audio Input Port Used to connect the audio input cable. Page 17: Installation & Connection installation & connection ❖ Camera Wiring Interface Board For the camera wiring, please refer to the picture below. Power Supply AC24V 2.5A Video Power Input Output Ground ETHERNET Alarm Alarm output Alarm Input Audio OUT Audio IN Communications and AUX TX- GND COM N.O Refer to Control Signal AUX Output... Page 18 installation & connection Control Signal Connection • • RS-485 Communications RS-422 Communications Controller Controller Camera or DVR Camera or DVR TXD+ TXD+

File. The picture does NOT include the softkeys. Data (csv) Saves trace data from the current Mode to a *.csv file. This format can be imported into spreadsheet software such as Microsoft Excel. Column A is always the frequency at which the data is measured. In SA Mode, all visible data traces are saved. Each trace is saved to a separate column that is labeled with the Trace State. In CAT and NA Modes, only the data trace is saved – not the memory trace. In Power Meter (with Option 208 Frequency Offset Power Sensor (FOPS)), all visible traces are saved. Each trace is saved to a separate column labeled Output Power or Memory. In VVM Mode, NO data is saved. Group Saves a group of file types that have been selected in the Preferences menu. Learn more, see “Group Save File Types Editing”. Data (S1P) / (S2P) Saves CAT and NA Mode trace data to an *.S1P or *.S2P file, depending on the active measurement. This file format is used by CAE programs such as Keysight's Microwave Design System (MDS) and Advanced Design System (ADS). It can also be imported into spreadsheet software such as Microsoft Excel.About SNP FilesThe SNP file includes header information, and the following data: S1P - saves 1-port (receiver) data for the active data trace. *.s1p Files contain 1 stimulus value and 1 S-parameter (total of 3 scalar values) Stim Real(Sxx) Imag(Sxx) S2P (NA Mode ONLY) - saves 2-port data for the active trace. *.s2p Files contain 1 stimulus value and 4 S-parameters (total of 9 scalar values) Stim Real(S11) Imag(S11) Real(S21) Imag(S21) Real(S12) Imag(S12) Real(S22) Imag(S22) Only data traces are saved – not memory traces.Corrections When parameters are corrected, data is returned even when not displayed. Data is returned with the correction type that is applied for each S-parameter. The correction type for each S-parameter is annotated in the header. When parameters are NOT corrected or displayed: With Smith chart and Polar formats, Real/Imag zero-filled data appears as (1.0, 0.0). With all other formats, LogMag/Phase zero-filled data appears as (0.0, 0.0). > Display formatsIn CAT Mode, S1P files are always Magnitude (dB) / Phase (angle) format.In NA Mode: Smith chart and Polar display formats are ALWAYS saved in Real/Imag data pairs. All other display formats are saved in LogMag/Phase (dbAngle).> What Data Processing functions are included in saved SNP Data:In NA Mode, the data processing functions (such as trace math) that are included in the SNP data depends on a Preference setting. Click System, then Preferences, then Preferences, then scroll to NA, SNP File Save, then select from the following: Default – SNP data does NOT include smoothing. SNP data saves are taken AFTER data processing (location 2) on the processing chain. Advanced – SNP data includes the following: With Smith or Polar display format, SNP data saves are taken BEFORE most processing (location 1 on the data processing chain). With any other display format, SNP data saves are taken just AFTER Formatting and

The same reference, you canproduce an alignment of "core SNPs" which can be used to build ahigh-resolution phylogeny (ignoring possible recombination). A "core site"is a genomic position that is present in all the samples. A core site canhave the same nucleotide in every sample ("monomorphic") or some samples canbe different ("polymorphic" or "variant"). If we ignore the complicationsof "ins", "del" variant types, and just use variant sites, these are the "core SNP genome".Input Requirementsa set of Snippy folders which used the same --ref sequence.Using snippy-multiTo simplify running a set of isolate sequences (reads or contigs)against the same reference, you can use the snippy-multi script.This script requires a tab separated input file as follows, andcan handle paired-end reads, single-end reads, and assembled contigs.# input.tab = ID R1 [R2]Isolate1 /path/to/R1.fq.gz /path/to/R2.fq.gzIsolate1b /path/to/R1.fastq.gz /path/to/R2.fastq.gzIsolate1c /path/to/R1.fa /path/to/R2.fa# single end reads supported tooIsolate2 /path/to/SE.fq.gzIsolate2b /path/to/iontorrent.fastq# or already assembled contigs if you don't have readsIsolate3 /path/to/contigs.faIsolate3b /path/to/reference.fna.gzThen one would run this to generate the output script.The first parameter should be the input.tab file.The remaining parameters should be any remainingshared snippy parameters. The ID will be used foreach isolate's --outdir. runme.sh% less runme.sh # check the script makes sense% sh ./runme.sh # leave it running over lunch">% snippy-multi input.tab --ref Reference.gbk --cpus 16 > runme.sh% less runme.sh # check the script makes sense% sh ./runme.sh # leave it running over lunchIt will also run snippy-core at the end to generate thecore genome SNP alignment files core.*.Output FilesExtensionDescription.alnA core SNP alignment in the --aformat format (default FASTA).full.alnA whole genome SNP alignment (includes invariant sites).tabTab-separated columnar list of core SNP sites with alleles but NO annotations.vcfMulti-sample VCF file with genotype GT tags for all discovered alleles.txtTab-separated columnar list of alignment/core-size statistics.ref.faFASTA version/copy of the --ref.self_mask.bedBED file generated if --mask auto is used.Why is core.full.aln an alphabet soup?The core.full.aln file